Re: CentOS 64 bit php 5.2 huge problem

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On Saturday, February 12, 2011 05:59:52 pm Peter Ivanov wrote:
> Hi Lamar,
> 
> here they are

> [root@host ~]# rpm -V mysql
> S.5.....  c /etc/my.cnf
> prelink: /usr/bin/my_print_defaults: at least one of file's dependencies 
> has changed since prelinking
> S.?.....    /usr/bin/my_print_defaults
[snip]
> prelink: /usr/lib64/mysql/libmysqlclient.so.15.0.0: at least one of 
> file's dependencies has changed since prelinking
> S.?.....    /usr/lib64/mysql/libmysqlclient.so.15.0.0
> prelink: /usr/lib64/mysql/libmysqlclient_r.so.15.0.0: at least one of 
> file's dependencies has changed since prelinking
> S.?.....    /usr/lib64/mysql/libmysqlclient_r.so.15.0.0
> S.5.....  c /etc/my.cnf

> I hope this gives a clue

It looks like your mysql installation has been corrupted in some way; the ? indicates that the process could not complete for some reason (and that's in the MD5 section), and the S means the size differs.  I ran this on a server I have access to, and no such lines were output.

You will want to 'ls -l /isr/lib64/mysql/libmysql*' and check permissions and sizes.  My gut feel is that the size will turn out to be zero, or something really odd.

You can try 'yum reinstall mysql.x86_64' to refresh it.

I would do an 'rpm -Va' on the box and see what else is corrupted, and run (from read-only media) a copy of something like rkhunter or checkrootkit. You may have an intruder on your system.

Also, here are the md5sums from my setup, of just the x86_64 mysql rpm, which is the same version as yours.  You can run the command line at the top for yourself, and hand-compare the md5sums....
++++++++++++++++++++++++
[root@localhost ~]# rpm -ql mysql|xargs md5sum
ac3aebcaf6963ab83a099706d0d512f4  /etc/ld.so.conf.d/mysql-x86_64.conf
740258c758e3ef283d2fd5f862bc9e4c  /etc/my.cnf
52bcda45f35ffb42a7e032eea9b5655f  /usr/bin/msql2mysql
b4e80dabbbcd3cad7c88e1337872f435  /usr/bin/my_print_defaults
8405d6d62b45c6645a0a529540c7cfdb  /usr/bin/mysql
17b56ddc4639ad47ae48ff2176dab909  /usr/bin/mysql_config
b4ef945be869bc738711bdc18bc48f14  /usr/bin/mysql_find_rows
eac07b461dd7dfa0eea248d2d08e3da0  /usr/bin/mysql_tableinfo
3c99880d7c4080dacafbec32256b1042  /usr/bin/mysql_waitpid
0afee772423c6d3840726ee8d095d6c6  /usr/bin/mysqlaccess
523e7f51f86d561795dc3626f3cb2bc5  /usr/bin/mysqladmin
b47aae44ccc50d67fcdd4ccb482bdb5e  /usr/bin/mysqlbinlog
4960f633d8dd1cc9fa7a72b8ae6dfbf7  /usr/bin/mysqlcheck
c84e1610e673484c6c819a78b456db49  /usr/bin/mysqldump
250047b2132a66d7a85950980a2f3e33  /usr/bin/mysqlimport
3a41a101b17997bb89089ba8b52a4700  /usr/bin/mysqlshow
md5sum: /usr/lib64/mysql: Is a directory
e6a5df475ce7bbdf12b6aeab7657b12b  /usr/lib64/mysql/libmysqlclient.so.15
e6a5df475ce7bbdf12b6aeab7657b12b  /usr/lib64/mysql/libmysqlclient.so.15.0.0
d28d5ea0c03dc17bde8981ec404551ce  /usr/lib64/mysql/libmysqlclient_r.so.15
d28d5ea0c03dc17bde8981ec404551ce  /usr/lib64/mysql/libmysqlclient_r.so.15.0.0
b657ace1e8d098faf73ce1238cc596e2  /usr/lib64/mysql/mysql_config
26d217110de4bf0620d76084935e0a25  /usr/lib64/mysql/mysqlbug
md5sum: /usr/share/doc/mysql-5.0.77: Is a directory
477ab0a4c8ca64b482b3f2a365d0fdfa  /usr/share/doc/mysql-5.0.77/COPYING
d9ad42b427ace53cb3e752092b040c59  /usr/share/doc/mysql-5.0.77/EXCEPTIONS-CLIENT
f042efae8bc01e77901896b6e94843f3  /usr/share/doc/mysql-5.0.77/README
ca0fafe8b95c20b3e69b63e51c32c0ad  /usr/share/info/mysql.info.gz
cc76b6ecb25e7d82d06dc735b5ad82b4  /usr/share/man/man1/my_print_defaults.1.gz
da118d1aab5e886c031cc032d71f54ea  /usr/share/man/man1/mysql.1.gz
9c31872658e1567cdc999ca282243328  /usr/share/man/man1/mysql_config.1.gz
4d32b2a0280a0306da16b32e273cf56a  /usr/share/man/man1/mysql_find_rows.1.gz
0171df50c4b0c760457782fd3818abf8  /usr/share/man/man1/mysql_tableinfo.1.gz
1ed1c10ec19551ab2a28ecf09118c389  /usr/share/man/man1/mysql_waitpid.1.gz
1615660ea4d184e210e15b8584816d54  /usr/share/man/man1/mysqlaccess.1.gz
1bdc7a0175bcc3a3540d1725a159bed7  /usr/share/man/man1/mysqladmin.1.gz
ecd3526b77032defc84b26aa85f901c7  /usr/share/man/man1/mysqldump.1.gz
29d81f551a60f283b0ee9a41c8456ec9  /usr/share/man/man1/mysqlshow.1.gz
md5sum: /usr/share/mysql: Is a directory
md5sum: /usr/share/mysql/charsets: Is a directory
5efa1112115331425740e789d2b4f77e  /usr/share/mysql/charsets/Index.xml
c17e32bb326c2ea2c39d064219605b15  /usr/share/mysql/charsets/README
b8d6f26e44e815ed164fe7ada537c7e9  /usr/share/mysql/charsets/armscii8.xml
381d926414521380a8cb490f0cda4f15  /usr/share/mysql/charsets/ascii.xml
1559a8a48cf98797db00833ada133e90  /usr/share/mysql/charsets/cp1250.xml
71c729b0689a5cbf3169528542c1a192  /usr/share/mysql/charsets/cp1251.xml
91a747ddefc0705f9cf187ef7aebedbf  /usr/share/mysql/charsets/cp1256.xml
2d39aa0a3afd5c4373360c5affd09de6  /usr/share/mysql/charsets/cp1257.xml
f82f1f41704c4715c2fe3d90f27712ec  /usr/share/mysql/charsets/cp850.xml
e3a297db9dee58cdccc53f0f33a705d6  /usr/share/mysql/charsets/cp852.xml
e6fa1450652d8cea162a480b486b8a17  /usr/share/mysql/charsets/cp866.xml
dd31812ea0df98e082e6695ab9524c64  /usr/share/mysql/charsets/dec8.xml
ba4b6cfef55e334ca951e089068321ba  /usr/share/mysql/charsets/geostd8.xml
43784535eb3e5c2d6481dcd16d0931f1  /usr/share/mysql/charsets/greek.xml
39fceb7330311441c5b4d4d6c77501eb  /usr/share/mysql/charsets/hebrew.xml
8fc7fe06c3566bf5e3d6a17b404b5b17  /usr/share/mysql/charsets/hp8.xml
4a03d1982389f176f72df5ce54c5b6ff  /usr/share/mysql/charsets/keybcs2.xml
196f36dd3ef90c5e4beabb2ebf5ef8ee  /usr/share/mysql/charsets/koi8r.xml
fe1619b5f70a191f9591fcaf6f6d7811  /usr/share/mysql/charsets/koi8u.xml
ace04e7f96d7f9cc708bb29a8bdf7c96  /usr/share/mysql/charsets/latin1.xml
1b3d66db05887a77750ead396620c769  /usr/share/mysql/charsets/latin2.xml
d5a0965c5cb697906b5090a1140b8d45  /usr/share/mysql/charsets/latin5.xml
fd9d63a219f19cfb61c558aadf59521b  /usr/share/mysql/charsets/latin7.xml
5e84207fbd7c1d4cf5815473ffc9e123  /usr/share/mysql/charsets/macce.xml
7091b5d8e7e195ed9dad61e7ab3b073d  /usr/share/mysql/charsets/macroman.xml
bbd792e26f054350bc39469848350962  /usr/share/mysql/charsets/swe7.xml
md5sum: /usr/share/mysql/czech: Is a directory
2c3d55073d5d3cc8f429b68ccea61c19  /usr/share/mysql/czech/errmsg.sys
md5sum: /usr/share/mysql/danish: Is a directory
c76b6ceacad7c0c1f86f4b76b91bb7ac  /usr/share/mysql/danish/errmsg.sys
md5sum: /usr/share/mysql/dutch: Is a directory
9f4d61ad4a34e97df2348bf62c284134  /usr/share/mysql/dutch/errmsg.sys
md5sum: /usr/share/mysql/english: Is a directory
19e12c5cb1c97877d026d38fa074826b  /usr/share/mysql/english/errmsg.sys
md5sum: /usr/share/mysql/estonian: Is a directory
c48de1746d11cc9d509301b19aa9f484  /usr/share/mysql/estonian/errmsg.sys
md5sum: /usr/share/mysql/french: Is a directory
f384cd144d412d5293d400e2c45488c1  /usr/share/mysql/french/errmsg.sys
md5sum: /usr/share/mysql/german: Is a directory
653abc21d8da809c1e59e922ff5f170c  /usr/share/mysql/german/errmsg.sys
md5sum: /usr/share/mysql/greek: Is a directory
090eb385018ea3560bd3befd9538d0c1  /usr/share/mysql/greek/errmsg.sys
md5sum: /usr/share/mysql/hungarian: Is a directory
6e64029a1ee1c0c56e9640e096dce6c3  /usr/share/mysql/hungarian/errmsg.sys
md5sum: /usr/share/mysql/italian: Is a directory
563d9bb3a312dbc18d2ea7a0f6fb687d  /usr/share/mysql/italian/errmsg.sys
md5sum: /usr/share/mysql/japanese: Is a directory
f3e26c85626f17b18c745fd97c8b33fa  /usr/share/mysql/japanese/errmsg.sys
md5sum: /usr/share/mysql/korean: Is a directory
dbe21e7e7b7c4798bb1c4ffdf361ed00  /usr/share/mysql/korean/errmsg.sys
md5sum: /usr/share/mysql/norwegian: Is a directory
md5sum: /usr/share/mysql/norwegian-ny: Is a directory
f99279d0ef8837f693a37ead19a1c207  /usr/share/mysql/norwegian-ny/errmsg.sys
40a2b5e4aea442ed22f5b8f9346c2f2c  /usr/share/mysql/norwegian/errmsg.sys
md5sum: /usr/share/mysql/polish: Is a directory
0efb064c4e01eb7a94a3d9229a903341  /usr/share/mysql/polish/errmsg.sys
md5sum: /usr/share/mysql/portuguese: Is a directory
73a69002de8b7e030284461b1db057ed  /usr/share/mysql/portuguese/errmsg.sys
md5sum: /usr/share/mysql/romanian: Is a directory
b33d4aba038036fe159395bf25c33322  /usr/share/mysql/romanian/errmsg.sys
md5sum: /usr/share/mysql/russian: Is a directory
dae069e2e7960f81a93f493185fbca24  /usr/share/mysql/russian/errmsg.sys
md5sum: /usr/share/mysql/serbian: Is a directory
fff38765748f903021fbbd6f774a3fb9  /usr/share/mysql/serbian/errmsg.sys
md5sum: /usr/share/mysql/slovak: Is a directory
66298b60a236c31729e498fa837dcca3  /usr/share/mysql/slovak/errmsg.sys
md5sum: /usr/share/mysql/spanish: Is a directory
0a2b77e13083e07120378d97b40d2009  /usr/share/mysql/spanish/errmsg.sys
md5sum: /usr/share/mysql/swedish: Is a directory
ddda853ba6c417ca68e2184046d500c8  /usr/share/mysql/swedish/errmsg.sys
md5sum: /usr/share/mysql/ukrainian: Is a directory
4b645ed41df2e33df138f98164644a38  /usr/share/mysql/ukrainian/errmsg.sys
7e264e51a65d504766c1c7fedb8af6c5  /etc/ld.so.conf.d/mysql-i386.conf
740258c758e3ef283d2fd5f862bc9e4c  /etc/my.cnf
52bcda45f35ffb42a7e032eea9b5655f  /usr/bin/msql2mysql
b4e80dabbbcd3cad7c88e1337872f435  /usr/bin/my_print_defaults
8405d6d62b45c6645a0a529540c7cfdb  /usr/bin/mysql
17b56ddc4639ad47ae48ff2176dab909  /usr/bin/mysql_config
b4ef945be869bc738711bdc18bc48f14  /usr/bin/mysql_find_rows
eac07b461dd7dfa0eea248d2d08e3da0  /usr/bin/mysql_tableinfo
3c99880d7c4080dacafbec32256b1042  /usr/bin/mysql_waitpid
0afee772423c6d3840726ee8d095d6c6  /usr/bin/mysqlaccess
523e7f51f86d561795dc3626f3cb2bc5  /usr/bin/mysqladmin
b47aae44ccc50d67fcdd4ccb482bdb5e  /usr/bin/mysqlbinlog
4960f633d8dd1cc9fa7a72b8ae6dfbf7  /usr/bin/mysqlcheck
c84e1610e673484c6c819a78b456db49  /usr/bin/mysqldump
250047b2132a66d7a85950980a2f3e33  /usr/bin/mysqlimport
3a41a101b17997bb89089ba8b52a4700  /usr/bin/mysqlshow
md5sum: /usr/lib/mysql: Is a directory
44a9f1220c1922476cc05f814e005f54  /usr/lib/mysql/libmysqlclient.so.15
44a9f1220c1922476cc05f814e005f54  /usr/lib/mysql/libmysqlclient.so.15.0.0
59bccf846ab0ae0196be2ad94f90bd88  /usr/lib/mysql/libmysqlclient_r.so.15
59bccf846ab0ae0196be2ad94f90bd88  /usr/lib/mysql/libmysqlclient_r.so.15.0.0
5d6fea0d3a39effa3e6c59cd3ede9c26  /usr/lib/mysql/mysql_config
9a291c9b6663d6e7d6cb2809dc9f61d7  /usr/lib/mysql/mysqlbug
md5sum: /usr/share/doc/mysql-5.0.77: Is a directory
477ab0a4c8ca64b482b3f2a365d0fdfa  /usr/share/doc/mysql-5.0.77/COPYING
d9ad42b427ace53cb3e752092b040c59  /usr/share/doc/mysql-5.0.77/EXCEPTIONS-CLIENT
f042efae8bc01e77901896b6e94843f3  /usr/share/doc/mysql-5.0.77/README
ca0fafe8b95c20b3e69b63e51c32c0ad  /usr/share/info/mysql.info.gz
cc76b6ecb25e7d82d06dc735b5ad82b4  /usr/share/man/man1/my_print_defaults.1.gz
da118d1aab5e886c031cc032d71f54ea  /usr/share/man/man1/mysql.1.gz
9c31872658e1567cdc999ca282243328  /usr/share/man/man1/mysql_config.1.gz
4d32b2a0280a0306da16b32e273cf56a  /usr/share/man/man1/mysql_find_rows.1.gz
0171df50c4b0c760457782fd3818abf8  /usr/share/man/man1/mysql_tableinfo.1.gz
1ed1c10ec19551ab2a28ecf09118c389  /usr/share/man/man1/mysql_waitpid.1.gz
1615660ea4d184e210e15b8584816d54  /usr/share/man/man1/mysqlaccess.1.gz
1bdc7a0175bcc3a3540d1725a159bed7  /usr/share/man/man1/mysqladmin.1.gz
ecd3526b77032defc84b26aa85f901c7  /usr/share/man/man1/mysqldump.1.gz
29d81f551a60f283b0ee9a41c8456ec9  /usr/share/man/man1/mysqlshow.1.gz
md5sum: /usr/share/mysql: Is a directory
md5sum: /usr/share/mysql/charsets: Is a directory
5efa1112115331425740e789d2b4f77e  /usr/share/mysql/charsets/Index.xml
c17e32bb326c2ea2c39d064219605b15  /usr/share/mysql/charsets/README
b8d6f26e44e815ed164fe7ada537c7e9  /usr/share/mysql/charsets/armscii8.xml
381d926414521380a8cb490f0cda4f15  /usr/share/mysql/charsets/ascii.xml
1559a8a48cf98797db00833ada133e90  /usr/share/mysql/charsets/cp1250.xml
71c729b0689a5cbf3169528542c1a192  /usr/share/mysql/charsets/cp1251.xml
91a747ddefc0705f9cf187ef7aebedbf  /usr/share/mysql/charsets/cp1256.xml
2d39aa0a3afd5c4373360c5affd09de6  /usr/share/mysql/charsets/cp1257.xml
f82f1f41704c4715c2fe3d90f27712ec  /usr/share/mysql/charsets/cp850.xml
e3a297db9dee58cdccc53f0f33a705d6  /usr/share/mysql/charsets/cp852.xml
e6fa1450652d8cea162a480b486b8a17  /usr/share/mysql/charsets/cp866.xml
dd31812ea0df98e082e6695ab9524c64  /usr/share/mysql/charsets/dec8.xml
ba4b6cfef55e334ca951e089068321ba  /usr/share/mysql/charsets/geostd8.xml
43784535eb3e5c2d6481dcd16d0931f1  /usr/share/mysql/charsets/greek.xml
39fceb7330311441c5b4d4d6c77501eb  /usr/share/mysql/charsets/hebrew.xml
8fc7fe06c3566bf5e3d6a17b404b5b17  /usr/share/mysql/charsets/hp8.xml
4a03d1982389f176f72df5ce54c5b6ff  /usr/share/mysql/charsets/keybcs2.xml
196f36dd3ef90c5e4beabb2ebf5ef8ee  /usr/share/mysql/charsets/koi8r.xml
fe1619b5f70a191f9591fcaf6f6d7811  /usr/share/mysql/charsets/koi8u.xml
ace04e7f96d7f9cc708bb29a8bdf7c96  /usr/share/mysql/charsets/latin1.xml
1b3d66db05887a77750ead396620c769  /usr/share/mysql/charsets/latin2.xml
d5a0965c5cb697906b5090a1140b8d45  /usr/share/mysql/charsets/latin5.xml
fd9d63a219f19cfb61c558aadf59521b  /usr/share/mysql/charsets/latin7.xml
5e84207fbd7c1d4cf5815473ffc9e123  /usr/share/mysql/charsets/macce.xml
7091b5d8e7e195ed9dad61e7ab3b073d  /usr/share/mysql/charsets/macroman.xml
bbd792e26f054350bc39469848350962  /usr/share/mysql/charsets/swe7.xml
md5sum: /usr/share/mysql/czech: Is a directory
2c3d55073d5d3cc8f429b68ccea61c19  /usr/share/mysql/czech/errmsg.sys
md5sum: /usr/share/mysql/danish: Is a directory
c76b6ceacad7c0c1f86f4b76b91bb7ac  /usr/share/mysql/danish/errmsg.sys
md5sum: /usr/share/mysql/dutch: Is a directory
9f4d61ad4a34e97df2348bf62c284134  /usr/share/mysql/dutch/errmsg.sys
md5sum: /usr/share/mysql/english: Is a directory
19e12c5cb1c97877d026d38fa074826b  /usr/share/mysql/english/errmsg.sys
md5sum: /usr/share/mysql/estonian: Is a directory
c48de1746d11cc9d509301b19aa9f484  /usr/share/mysql/estonian/errmsg.sys
md5sum: /usr/share/mysql/french: Is a directory
f384cd144d412d5293d400e2c45488c1  /usr/share/mysql/french/errmsg.sys
md5sum: /usr/share/mysql/german: Is a directory
653abc21d8da809c1e59e922ff5f170c  /usr/share/mysql/german/errmsg.sys
md5sum: /usr/share/mysql/greek: Is a directory
090eb385018ea3560bd3befd9538d0c1  /usr/share/mysql/greek/errmsg.sys
md5sum: /usr/share/mysql/hungarian: Is a directory
6e64029a1ee1c0c56e9640e096dce6c3  /usr/share/mysql/hungarian/errmsg.sys
md5sum: /usr/share/mysql/italian: Is a directory
563d9bb3a312dbc18d2ea7a0f6fb687d  /usr/share/mysql/italian/errmsg.sys
md5sum: /usr/share/mysql/japanese: Is a directory
f3e26c85626f17b18c745fd97c8b33fa  /usr/share/mysql/japanese/errmsg.sys
md5sum: /usr/share/mysql/korean: Is a directory
dbe21e7e7b7c4798bb1c4ffdf361ed00  /usr/share/mysql/korean/errmsg.sys
md5sum: /usr/share/mysql/norwegian: Is a directory
md5sum: /usr/share/mysql/norwegian-ny: Is a directory
f99279d0ef8837f693a37ead19a1c207  /usr/share/mysql/norwegian-ny/errmsg.sys
40a2b5e4aea442ed22f5b8f9346c2f2c  /usr/share/mysql/norwegian/errmsg.sys
md5sum: /usr/share/mysql/polish: Is a directory
0efb064c4e01eb7a94a3d9229a903341  /usr/share/mysql/polish/errmsg.sys
md5sum: /usr/share/mysql/portuguese: Is a directory
73a69002de8b7e030284461b1db057ed  /usr/share/mysql/portuguese/errmsg.sys
md5sum: /usr/share/mysql/romanian: Is a directory
b33d4aba038036fe159395bf25c33322  /usr/share/mysql/romanian/errmsg.sys
md5sum: /usr/share/mysql/russian: Is a directory
dae069e2e7960f81a93f493185fbca24  /usr/share/mysql/russian/errmsg.sys
md5sum: /usr/share/mysql/serbian: Is a directory
fff38765748f903021fbbd6f774a3fb9  /usr/share/mysql/serbian/errmsg.sys
md5sum: /usr/share/mysql/slovak: Is a directory
66298b60a236c31729e498fa837dcca3  /usr/share/mysql/slovak/errmsg.sys
md5sum: /usr/share/mysql/spanish: Is a directory
0a2b77e13083e07120378d97b40d2009  /usr/share/mysql/spanish/errmsg.sys
md5sum: /usr/share/mysql/swedish: Is a directory
ddda853ba6c417ca68e2184046d500c8  /usr/share/mysql/swedish/errmsg.sys
md5sum: /usr/share/mysql/ukrainian: Is a directory
4b645ed41df2e33df138f98164644a38  /usr/share/mysql/ukrainian/errmsg.sys
[root@localhost ~]# 
++++++++++++++++++++++++

Hope that helps....
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