Apache 2.2 Reinstall After a Crash Not Working With Perl and MyQL

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I’ve had Apache 2.2 running on Windows Server2012 for several years. The host hardware is a dedicated server. The Apache server suddenly crashed and would not restart. Not being able to determine why, I reinstalled the software and it now can be stopped and started. Apache was previously hosting several websites (using the Vhost include)and a MySQL database was/is on the Windows server. CGI programs are PERL and all worked prior to the Apache reinstall. Now I have at least three problems that I think are due to errors in the httpd config.

1) The only CGI programs that work are those that call static webpages.
2) Programs that previously connected to the MySQL database do not connect.
2) Programs that look for the htaccess authority file do not find it.

Hence I think the errors are in the httpd config file. Or, since the hard drive is partitioned C,D,E and Apache is on C and website files are on E, is it possible that the partitions have somehow become corrupted. Everything except the httpd config file is exactly as it was previously. Where are the most likely places for config errors causing the current difficulties?

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