I see you posed from Thunderbird, but do you use Evolution, at all? Email, calendar, contacts? If so it'll be trying to log in to a service, wanting its credentials. Other things have come to use parts of evolution as their libraries. For instance, if I try to remove evolution-data-server, it wants to remove gnome-shell, gnome-contacts, and folks, as well. If you look in gnome-session-properties (I'm doing this from old info, it may have changed since then), you'll see applications that will be started up when you log in. There could be something evolution related in there that you aren't actually using.
I don't use Evolution, but like you said other things including GNOME Calendar use evolution-data-server. I can make KeePassXC not prompt me when a program tries to search, but I would have to remember to unlock the database every time before doing anything that needs it. I don't have any auto-started programs that might need Secret Service other than Thunderbird, and last time I checked Thunderbird doesn't support Secret Service.
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