On Sat, 18 Jul 2020, José Abílio Matos wrote:
On Saturday, 18 July 2020 21.22.17 WEST Max Pyziur wrote: > Greetings, > > I've installed some R libraries that are not available as rpm packages, > specifically matlib and a few others. > > Recently, R was ported to version 4.0.x and these libraries are not > callable. When I remove them and try to install them all sorts of > dependencies are either removed or become problematic. > > Any advice? > > Much thanks, > > Max Pyziur What are the errors you are seeing?
As an example:
install.packages('matlib')
Installing package into ‘/usr/lib64/R/library’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- also installing the dependencies ‘crosstalk’, ‘rgl’trying URL 'https://packages.othr.de/cran/src/contrib/crosstalk_1.1.0.1.tar.gz'
Content type 'text/plain' length 673125 bytes (657 KB) ================================================== downloaded 657 KB trying URL 'https://packages.othr.de/cran/src/contrib/rgl_0.100.54.tar.gz' Content type 'text/plain' length 2952743 bytes (2.8 MB) ================================================== downloaded 2.8 MB trying URL 'https://packages.othr.de/cran/src/contrib/matlib_0.9.3.tar.gz' Content type 'text/plain' length 220211 bytes (215 KB) ================================================== downloaded 215 KB * installing *source* package ‘crosstalk’ ... ** package ‘crosstalk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error: package ‘R6’ was installed before R 4.0.0: please re-install it Execution halted ERROR: lazy loading failed for package ‘crosstalk’ * removing ‘/usr/lib64/R/library/crosstalk’ ERROR: dependency ‘crosstalk’ is not available for package ‘rgl’ * removing ‘/usr/lib64/R/library/rgl’ ERROR: dependency ‘rgl’ is not available for package ‘matlib’ * removing ‘/usr/lib64/R/library/matlib’ The downloaded source packages are in ‘/tmp/Rtmpnvhegn/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning messages: 1: In install.packages("matlib") : installation of package ‘crosstalk’ had non-zero exit status 2: In install.packages("matlib") : installation of package ‘rgl’ had non-zero exit status 3: In install.packages("matlib") : installation of package ‘matlib’ had non-zero exit statusR6 is available as a F32 RPM; however, it comes back w the above error message, fyi.
All packages need to be rebuilt for R 4.0 be it installed from rpms or otherwise. That is a requirement from R 4.0 and not from our installation.
FWIW you can also install packages from cran as rpms using: https://copr.fedorainfracloud.org/coprs/iucar/cran/
Thanks; I'll check this out. Max
Regards, -- José Matos
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