Re: upgrading from f28 to f29 messed up my system...

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On Wed, 5 Dec 2018 13:03:19 +0100
François Patte <francois.patte@xxxxxxxxxxxxxxxxxxxx> wrote:

> Bonjour,
> 
> Yesterday I upgraded my system from f28 to f29 and the result is not
> what I expected! I can't get my "new" system working correctly: no
> graphic interface, a lot of errors in the logs....
> 
> I previously upgraded this system from f25 to f27, then from f27 to
> f28 without any problems...
> 
> This system uses raid 1 + lvm: here is the result of lsblk
> 
> NAME                      MAJ:MIN RM   SIZE RO TYPE  MOUNTPOINT
> sda                         8:0    0 111,8G  0 disk
> ├─sda1                      8:1    0     1G  0 part
> │ └─md2                     9:2    0     1G  0 raid1 /boot
> ├─sda2                      8:2    0    60G  0 part
> │ └─md127                   9:127  0    60G  0 raid1
> │   └─debian-deb--racine  253:0    0  29,3G  0 lvm   /
> ├─sda3                      8:3    0     1G  0 part
> └─sda4                      8:4    0  49,8G  0 part
>   └─md11                    9:11   0  49,8G  0 raid1
>     ├─fedora-racine       253:2    0     2G  0 lvm
>     └─fedora-usr          253:3    0    28G  0 lvm
> sdb                         8:16   0 111,8G  0 disk
> ├─sdb1                      8:17   0     1G  0 part
> │ └─md2                     9:2    0     1G  0 raid1 /boot
> ├─sdb2                      8:18   0    60G  0 part
> │ └─md127                   9:127  0    60G  0 raid1
> │   └─debian-deb--racine  253:0    0  29,3G  0 lvm   /
> ├─sdb3                      8:19   0     1G  0 part
> └─sdb4                      8:20   0  49,8G  0 part
>   └─md11                    9:11   0  49,8G  0 raid1
>     ├─fedora-racine       253:2    0     2G  0 lvm
>     └─fedora-usr          253:3    0    28G  0 lvm
> sdc                         8:32   0 465,8G  0 disk
> └─sdc1                      8:33   0 465,8G  0 part
>   └─md1                     9:1    0 465,7G  0 raid1
>     ├─annexes-data        253:7    0   260G  0 lvm   /commun
>     └─annexes-sauvegardes 253:8    0   205G  0 lvm   /sauvegardes
> sdd                         8:48   0 465,8G  0 disk
> └─sdd1                      8:49   0 465,8G  0 part
>   └─md1                     9:1    0 465,7G  0 raid1
>     ├─annexes-data        253:7    0   260G  0 lvm   /commun
>     └─annexes-sauvegardes 253:8    0   205G  0 lvm   /sauvegardes
> sde                         8:64   0 931,5G  0 disk
> ├─sde1                      8:65   0    40G  0 part
> │ └─md4                     9:4    0    40G  0 raid1
> │   ├─systeme-swap        253:1    0     4G  0 lvm   [SWAP]
> │   ├─systeme-var         253:5    0    15G  0 lvm   /var
> │   └─systeme-chiffre     253:6    0    15G  0 lvm
> └─sde2                      8:66   0 891,5G  0 part
>   └─md5                     9:5    0 891,4G  0 raid1
>     └─data-home           253:4    0   500G  0 lvm   /home
> sdf                         8:80   0 931,5G  0 disk
> ├─sdf1                      8:81   0    40G  0 part
> │ └─md4                     9:4    0    40G  0 raid1
> │   ├─systeme-swap        253:1    0     4G  0 lvm   [SWAP]
> │   ├─systeme-var         253:5    0    15G  0 lvm   /var
> │   └─systeme-chiffre     253:6    0    15G  0 lvm
> └─sdf2                      8:82   0 891,5G  0 part
>   └─md5                     9:5    0 891,4G  0 raid1
>     └─data-home           253:4    0   500G  0 lvm   /home
> sr0                        11:0    1  1024M  0 rom
> sr1                        11:1    1  1024M  0 rom
> 
> Don't pay attention to the names (debian or fedora) these are the
> names I gave a long time ago and I did not change the labels for some
> volumes.
> 
> 
> Now here are the errors I get in the boot logs:
> 
> 1- déc. 05 11:33:05 dipankar systemd[1]: systemd-modules-load.service:
> Main process exited, code=exited, status=1/FAILURE
> déc. 05 11:33:05 dipankar systemd[1]: systemd-modules-load.service:
> Failed with result 'exit-code'.
> déc. 05 11:33:05 dipankar systemd[1]: Failed to start Load Kernel
> Modules. -- Subject: L'unité (unit) systemd-modules-load.service a
> échoué
> 
> This error occurs several times during the boot process.
> 
> 2- A lot of errors about lvm also occur:
> 
>  déc. 05 11:33:06 dipankar lvm[1178]:   3 logical volume(s) in volume
> group "systeme" now active
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Device mismatch
> detected for debian/deb-racine which is accessing /dev/md127 instead
> of /dev/sda2. déc. 05 11:33:06 dipankar lvm[1178]:   device-mapper:
> reload ioctl on (253:0) failed: Périphérique ou ressource occupé<----
> busy déc. 05 11:33:06 dipankar lvm[1178]:   Failed to suspend
> debian/deb-racine. déc. 05 11:33:06 dipankar kernel: device-mapper:
> table: 253:0: linear: Device lookup failed
> déc. 05 11:33:06 dipankar kernel: device-mapper: ioctl: error adding
> target to table
> .................
> 
> Here are all messages about lvm in the boot logs:
> 
> déc. 05 11:33:05 dipankar lvm[909]:   WARNING: found device with
> duplicate /dev/sdb2
> déc. 05 11:33:05 dipankar lvm[909]:   WARNING: found device with
> duplicate /dev/md127
> déc. 05 11:33:05 dipankar lvm[909]:   WARNING: Disabling lvmetad cache
> which does not support duplicate PVs.
> déc. 05 11:33:05 dipankar lvm[909]:   WARNING: Scan found duplicate
> PVs. déc. 05 11:33:05 dipankar lvm[909]:   WARNING: Not using lvmetad
> because cache update failed.
> déc. 05 11:33:05 dipankar lvm[909]:   WARNING: Not using device
> /dev/sdb2 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:05 dipankar lvm[909]:   WARNING: Not using device
> /dev/md127 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:05 dipankar lvm[909]:   WARNING: PV
> LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG prefers device /dev/sda2
> because of previous preference.
> déc. 05 11:33:05 dipankar lvm[909]:   1 logical volume(s) in volume
> group "systeme" monitored
> déc. 05 11:33:05 dipankar lvm[909]:   WARNING: Device mismatch
> detected for debian/deb-racine which is accessing /dev/md127 instead
> of /dev/sda2. déc. 05 11:33:05 dipankar lvm[909]:   1 logical
> volume(s) in volume group "debian" monitored
> déc. 05 11:33:05 dipankar audit[1]: SERVICE_START pid=1 uid=0
> auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0
> msg='unit=lvm2-monitor comm="systemd" exe="/usr/lib/systemd/systemd"
> hostname=? addr=? terminal=? res=success'
> -- Subject: L'unité (unit) lvm2-monitor.service a terminé son
> démarrage -- L'unité (unit) lvm2-monitor.service a terminé son
> démarrage, avec le résultat done.
> déc. 05 11:33:06 dipankar systemd[1]: Created slice
> system-lvm2\x2dpvscan.slice.
> -- Subject: L'unité (unit) system-lvm2\x2dpvscan.slice a terminé son
> démarrage
> -- L'unité (unit) system-lvm2\x2dpvscan.slice a terminé son démarrage,
> avec le résultat done.
> -- Subject: L'unité (unit) lvm2-pvscan@9:127.service a commencé à
> démarrer -- L'unité (unit) lvm2-pvscan@9:127.service a commencé à
> démarrer. -- Subject: L'unité (unit) lvm2-pvscan@9:4.service a
> commencé à démarrer -- L'unité (unit) lvm2-pvscan@9:4.service a
> commencé à démarrer. déc. 05 11:33:06 dipankar lvm[1178]:   WARNING:
> found device with duplicate /dev/sdb2
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: found device with
> duplicate /dev/md127
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Disabling lvmetad
> cache which does not support duplicate PVs.
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Scan found duplicate
> PVs. déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Not using lvmetad
> because cache update failed.
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Autoactivation reading
> from disk instead of lvmetad.
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: found device with
> duplicate /dev/sdb2
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: found device with
> duplicate /dev/md127
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: Disabling lvmetad
> cache which does not support duplicate PVs.
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: Scan found duplicate
> PVs. déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: Not using lvmetad
> because cache update failed.
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: Autoactivation reading
> from disk instead of lvmetad.
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Not using device
> /dev/sdb2 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Not using device
> /dev/md127 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: PV
> LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG prefers device /dev/sda2
> because of previous preference.
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: Not using device
> /dev/sdb2 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: Not using device
> /dev/md127 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: PV
> LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG prefers device /dev/sda2
> because of previous preference.
> -- Subject: L'unité (unit) lvm2-pvscan@9:11.service a commencé à
> démarrer -- L'unité (unit) lvm2-pvscan@9:11.service a commencé à
> démarrer. déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: found
> device with duplicate /dev/sdb2
> déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: found device with
> duplicate /dev/md127
> déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: Disabling lvmetad
> cache which does not support duplicate PVs.
> déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: Scan found duplicate
> PVs. déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: Not using lvmetad
> because cache update failed.
> déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: Autoactivation reading
> from disk instead of lvmetad.
> -- Subject: L'unité (unit) lvm2-pvscan@9:5.service a commencé à
> démarrer -- L'unité (unit) lvm2-pvscan@9:5.service a commencé à
> démarrer. déc. 05 11:33:06 dipankar lvm[1178]:   2 logical volume(s)
> in volume group "fedora" now active
> déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: found device with
> duplicate /dev/sdb2
> déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: found device with
> duplicate /dev/md127
> déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Disabling lvmetad
> cache which does not support duplicate PVs.
> déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Scan found duplicate
> PVs. déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Not using lvmetad
> because cache update failed.
> déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Autoactivation reading
> from disk instead of lvmetad.
> déc. 05 11:33:06 dipankar lvm[1182]:   2 logical volume(s) in volume
> group "fedora" now active
> déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: Not using device
> /dev/sdb2 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: Not using device
> /dev/md127 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: PV
> LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG prefers device /dev/sda2
> because of previous preference.
> -- Subject: L'unité (unit) lvm2-pvscan@9:1.service a commencé à
> démarrer -- L'unité (unit) lvm2-pvscan@9:1.service a commencé à
> démarrer. déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Not using
> device /dev/sdb2 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Not using device
> /dev/md127 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: PV
> LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG prefers device /dev/sda2
> because of previous preference.
> déc. 05 11:33:06 dipankar lvm[1222]:   2 logical volume(s) in volume
> group "fedora" now active
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: found device with
> duplicate /dev/sdb2
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: found device with
> duplicate /dev/md127
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: Disabling lvmetad
> cache which does not support duplicate PVs.
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: Scan found duplicate
> PVs. déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: Not using lvmetad
> because cache update failed.
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: Autoactivation reading
> from disk instead of lvmetad.
> déc. 05 11:33:06 dipankar lvm[1237]:   2 logical volume(s) in volume
> group "fedora" now active
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: Not using device
> /dev/sdb2 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: Not using device
> /dev/md127 for PV LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG.
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: PV
> LjsptA-OrMt-ClBo-ksAo-ZCcO-eAtj-NGGgvG prefers device /dev/sda2
> because of previous preference.
> déc. 05 11:33:06 dipankar lvm[1253]:   2 logical volume(s) in volume
> group "fedora" now active
> déc. 05 11:33:06 dipankar lvm[1178]:   1 logical volume(s) in volume
> group "data" now active
> déc. 05 11:33:06 dipankar lvm[1178]:   3 logical volume(s) in volume
> group "systeme" now active
> déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Device mismatch
> detected for debian/deb-racine which is accessing /dev/md127 instead
> of /dev/sda2. déc. 05 11:33:06 dipankar lvm[1178]:   device-mapper:
> reload ioctl on (253:0) failed: Périphérique ou ressource occupé
> déc. 05 11:33:06 dipankar lvm[1178]:   Failed to suspend
> debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1182]:   1 logical
> volume(s) in volume group "data" now active
> déc. 05 11:33:06 dipankar lvm[1222]:   1 logical volume(s) in volume
> group "data" now active
> déc. 05 11:33:06 dipankar lvm[1237]:   1 logical volume(s) in volume
> group "data" now active
> déc. 05 11:33:06 dipankar lvm[1182]:   3 logical volume(s) in volume
> group "systeme" now active
> déc. 05 11:33:06 dipankar lvm[1182]:   WARNING: Device mismatch
> detected for debian/deb-racine which is accessing /dev/md127 instead
> of /dev/sda2. déc. 05 11:33:06 dipankar lvm[1182]:   device-mapper:
> reload ioctl on (253:0) failed: Périphérique ou ressource occupé
> déc. 05 11:33:06 dipankar lvm[1182]:   Failed to suspend
> debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1178]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:06 dipankar lvm[1178]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1253]:   1
> logical volume(s) in volume group "data" now active
> déc. 05 11:33:06 dipankar lvm[1222]:   3 logical volume(s) in volume
> group "systeme" now active
> déc. 05 11:33:06 dipankar lvm[1222]:   WARNING: Device mismatch
> detected for debian/deb-racine which is accessing /dev/md127 instead
> of /dev/sda2. déc. 05 11:33:06 dipankar lvm[1222]:   device-mapper:
> reload ioctl on (253:0) failed: Périphérique ou ressource occupé
> déc. 05 11:33:06 dipankar lvm[1222]:   Failed to suspend
> debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1237]:   3 logical
> volume(s) in volume group "systeme" now active
> déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Device mismatch
> detected for debian/deb-racine which is accessing /dev/md127 instead
> of /dev/sda2. déc. 05 11:33:06 dipankar lvm[1237]:   device-mapper:
> reload ioctl on (253:0) failed: Périphérique ou ressource occupé
> déc. 05 11:33:06 dipankar lvm[1237]:   Failed to suspend
> debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1253]:   3 logical
> volume(s) in volume group "systeme" now active
> déc. 05 11:33:06 dipankar lvm[1253]:   WARNING: Device mismatch
> detected for debian/deb-racine which is accessing /dev/md127 instead
> of /dev/sda2. déc. 05 11:33:06 dipankar lvm[1253]:   device-mapper:
> reload ioctl on (253:0) failed: Périphérique ou ressource occupé
> déc. 05 11:33:06 dipankar lvm[1253]:   Failed to suspend
> debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1182]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:06 dipankar lvm[1182]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1178]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:06 dipankar lvm[1178]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1222]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:06 dipankar lvm[1222]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1237]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:06 dipankar lvm[1237]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1253]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:06 dipankar lvm[1253]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1182]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:06 dipankar lvm[1182]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:06 dipankar lvm[1178]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:06 dipankar lvm[1178]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1222]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1222]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1237]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1237]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1253]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1253]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1182]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1182]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1178]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1178]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1222]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1222]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1237]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1237]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1253]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1253]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1182]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1182]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1178]:
> debian: refresh before autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1178]:   Cannot activate LVs in VG
> debian while PVs appear on duplicate devices.
> déc. 05 11:33:07 dipankar lvm[1178]:   1 logical volume(s) in volume
> group "debian" now active
> déc. 05 11:33:07 dipankar lvm[1178]:   debian: autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1222]:   device-mapper: reload ioctl on
> (253:0) failed: Périphérique ou ressource occupé
> déc. 05 11:33:07 dipankar lvm[1222]:   Failed to suspend
> debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1237]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1237]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1253]:
> device-mapper: reload ioctl on (253:0) failed: Périphérique ou
> ressource occupé déc. 05 11:33:07 dipankar lvm[1253]:   Failed to
> suspend debian/deb-racine. déc. 05 11:33:07 dipankar lvm[1182]:
> debian: refresh before autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1182]:   Cannot activate LVs in VG
> debian while PVs appear on duplicate devices.
> déc. 05 11:33:07 dipankar lvm[1182]:   Cannot activate LVs in VG
> debian while PVs appear on duplicate devices.
> déc. 05 11:33:07 dipankar lvm[1182]:   1 logical volume(s) in volume
> group "debian" now active
> déc. 05 11:33:07 dipankar lvm[1182]:   debian: autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1222]:   debian: refresh before
> autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1222]:   Cannot activate LVs in VG
> debian while PVs appear on duplicate devices.
> déc. 05 11:33:07 dipankar lvm[1222]:   1 logical volume(s) in volume
> group "debian" now active
> déc. 05 11:33:07 dipankar lvm[1222]:   debian: autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1237]:   debian: refresh before
> autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1237]:   Cannot activate LVs in VG
> debian while PVs appear on duplicate devices.
> déc. 05 11:33:07 dipankar lvm[1237]:   1 logical volume(s) in volume
> group "debian" now active
> déc. 05 11:33:07 dipankar lvm[1237]:   debian: autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1253]:   debian: refresh before
> autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1253]:   Cannot activate LVs in VG
> debian while PVs appear on duplicate devices.
> déc. 05 11:33:07 dipankar lvm[1253]:   1 logical volume(s) in volume
> group "debian" now active
> déc. 05 11:33:07 dipankar lvm[1253]:   debian: autoactivation failed.
> déc. 05 11:33:07 dipankar lvm[1178]:   2 logical volume(s) in volume
> group "annexes" now active
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:127.service: Main
> process exited, code=exited, status=5/NOTINSTALLED
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:127.service:
> Failed with result 'exit-code'.
> -- Subject: L'unité (unit) lvm2-pvscan@9:127.service a échoué
> -- L'unité (unit) lvm2-pvscan@9:127.service a échoué, avec le résultat
> failed.
> déc. 05 11:33:07 dipankar audit[1]: SERVICE_START pid=1 uid=0
> auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0
> msg='unit=lvm2-pvscan@9:127 comm="systemd"
> exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=?
> res=failed' déc. 05 11:33:07 dipankar lvm[1222]:   2 logical
> volume(s) in volume group "annexes" now active
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:11.service: Main
> process exited, code=exited, status=5/NOTINSTALLED
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:11.service: Failed
> with result 'exit-code'.
> -- Subject: L'unité (unit) lvm2-pvscan@9:11.service a échoué
> -- L'unité (unit) lvm2-pvscan@9:11.service a échoué, avec le résultat
> failed.
> déc. 05 11:33:07 dipankar audit[1]: SERVICE_START pid=1 uid=0
> auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0
> msg='unit=lvm2-pvscan@9:11 comm="systemd"
> exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=?
> res=failed' déc. 05 11:33:07 dipankar lvm[1182]:   2 logical
> volume(s) in volume group "annexes" now active
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:4.service: Main
> process exited, code=exited, status=5/NOTINSTALLED
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:4.service: Failed
> with result 'exit-code'.
> -- Subject: L'unité (unit) lvm2-pvscan@9:4.service a échoué
> -- L'unité (unit) lvm2-pvscan@9:4.service a échoué, avec le résultat
> failed. déc. 05 11:33:07 dipankar audit[1]: SERVICE_START pid=1 uid=0
> auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0
> msg='unit=lvm2-pvscan@9:4 comm="systemd"
> exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=?
> res=failed' déc. 05 11:33:07 dipankar lvm[1237]:   2 logical
> volume(s) in volume group "annexes" now active
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:5.service: Main
> process exited, code=exited, status=5/NOTINSTALLED
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:5.service: Failed
> with result 'exit-code'.
> -- Subject: L'unité (unit) lvm2-pvscan@9:5.service a échoué
> -- L'unité (unit) lvm2-pvscan@9:5.service a échoué, avec le résultat
> failed. déc. 05 11:33:07 dipankar audit[1]: SERVICE_START pid=1 uid=0
> auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0
> msg='unit=lvm2-pvscan@9:5 comm="systemd"
> exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=?
> res=failed' déc. 05 11:33:07 dipankar lvm[1253]:   2 logical
> volume(s) in volume group "annexes" now active
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:1.service: Main
> process exited, code=exited, status=5/NOTINSTALLED
> déc. 05 11:33:07 dipankar systemd[1]: lvm2-pvscan@9:1.service: Failed
> with result 'exit-code'.
> -- Subject: L'unité (unit) lvm2-pvscan@9:1.service a échoué
> -- L'unité (unit) lvm2-pvscan@9:1.service a échoué, avec le résultat
> failed. déc. 05 11:33:07 dipankar audit[1]: SERVICE_START pid=1 uid=0
> auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0
> msg='unit=lvm2-pvscan@9:1 comm="systemd"
> exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=?
> res=failed'
> 
> 
> All the boot log (result of journalctl -xb) can be seen here:
> 
> http://www.mi.parisdescartes.fr/~patte/journal
> 
> I hope that someone could help me.
> 
> Thank you.
> 

I just took a quick look at the journal output, and this line jumped
out at me.

dipankar kernel: Command line:
BOOT_IMAGE=/vmlinuz-4.19.5-300.fc29.x86_64
root=/dev/mapper/debian-deb--racine ro
rd.md.uuid=95c11201:1509169a:860a8b84:c49f865c
rd.lvm.lv=debian/deb-racine
rd.md.uuid=eb8b5efe:5a8f9369:e940a0f3:83d63ad1

I see debian in there.  I'm not familiar enough to say if that is a
problem or not, but it seems strange that the kernel from fedora would
be booting a debian root partition.  Or did you just reuse a debian lvm
for fedora?

The other thing is that 
/dev/mapper/debian-deb--racine
seems to be different than 
debian/deb-racine

Is there a typo?  Should they both be debian/deb-racine?

Relevant systemd errors.

-- L'unité (unit) systemd-modules-load.service a commencé à démarrer.
déc. 05 11:33:06 dipankar lvm[1178]:   2 logical volume(s) in volume group "fedora" now active
déc. 05 11:33:06 dipankar systemd-modules-load[1238]: Failed to find module 'vboxdrv'
déc. 05 11:33:06 dipankar systemd-modules-load[1238]: Failed to find module 'vboxnetflt'
déc. 05 11:33:06 dipankar systemd-modules-load[1238]: Failed to find module 'vboxnetadp'
déc. 05 11:33:06 dipankar systemd-modules-load[1238]: Failed to find module 'vboxpci'
déc. 05 11:33:06 dipankar systemd[1]: systemd-modules-load.service: Main process exited, code=exited, status=1/FAILURE
déc. 05 11:33:06 dipankar systemd[1]: systemd-modules-load.service: Failed with result 'exit-code'.
déc. 05 11:33:06 dipankar systemd[1]: Failed to start Load Kernel Modules.
-- Subject: L'unité (unit) systemd-modules-load.service a échoué
-- Defined-By: systemd
-- Support: https://lists.freedesktop.org/mailman/listinfo/systemd-devel
-- 
-- L'unité (unit) systemd-modules-load.service a échoué, avec le résultat failed.
déc. 05 11:33:06 dipankar audit[1]: SERVICE_START pid=1 uid=0 auid=4294967295 ses=4294967295 subj=system_u:system_r:init_t:s0 msg='unit=systemd-modules-load comm="systemd" exe="/usr/lib/systemd/systemd" hostname=? addr=? terminal=? res=failed'
déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: found device with duplicate /dev/sdb2
déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: found device with duplicate /dev/md127
déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Disabling lvmetad cache which does not support duplicate PVs.
déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Scan found duplicate PVs.
déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Not using lvmetad because cache update failed.
déc. 05 11:33:06 dipankar lvm[1237]:   WARNING: Autoactivation reading from disk instead of lvmetad.
déc. 05 11:33:06 dipankar lvm[1182]:   2 logical volume(s) in volume group "fedora" now active
déc. 05 11:33:06 dipankar systemd[1]: Stopped Timer to wait for more drives before activating degraded array md1..


-- L'unité (unit) systemd-modules-load.service a échoué, avec le résultat failed.
déc. 05 11:33:06 dipankar kernel: usblp 1-1.6:1.0: usblp0: USB Bidirectional printer dev 4 if 0 alt 1 proto 2 vid 0x03F0 pid 0x0E17
déc. 05 11:33:06 dipankar kernel: usbcore: registered new interface driver usblp
déc. 05 11:33:06 dipankar lvm[1178]:   3 logical volume(s) in volume group "systeme" now active
déc. 05 11:33:06 dipankar lvm[1178]:   WARNING: Device mismatch detected for debian/deb-racine which is accessing /dev/md127 instead of /dev/sda2.
déc. 05 11:33:06 dipankar lvm[1178]:   device-mapper: reload ioctl on  (253:0) failed: Périphérique ou ressource occupé
déc. 05 11:33:06 dipankar lvm[1178]:   Failed to suspend debian/deb-racine.
déc. 05 11:33:06 dipankar kernel: device-mapper: table: 253:0: linear: Device lookup failed
déc. 05 11:33:06 dipankar kernel: device-mapper: ioctl: error adding target to table
déc. 05 11:33:06 dipankar systemd[1]: Found device /dev/mapper/systeme-var.

These seem to be the failures that are preventing you from successfully
booting.

Missing vbox modules for the kernel.
And mismatched names for devices, /dev/md127 instead of /dev/sda2

What to do about it, I'm not sure.  Check to be sure your boot stanzas
are OK?
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