as yet, i have never been unable to accept a site's unrecognized certificate. [firefox 24.8.0]
There are some certs that are pinned (tor's site is one I remember) and you can't override those easily. If you have removed the default CAs and run into this you have to go somewhere esle in the config to unpin the certs for the special sites. I don't remember all of the details, just that I needed to do it to be able to visit the tor site again.
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