[Scitech] Re: Updated hdf5/netcdf/octave coming to rawhide

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On Monday, 23 August 2021 04.01.56 WEST Orion Poplawski wrote:
> On 8/21/21 8:19 PM, Elliott Sales de Andrade wrote:
> > On Mon, 9 Aug 2021 at 21:42, Orion Poplawski <orion@xxxxxxxx> wrote:
> >> I'm starting to build packages and all dependencies for an updated
> >> hdf5/netcdf/octave stack in a side tag.
> > 
> > PS, it looks like you missed R-ncdf4 on this list; not sure if there are
> > others.
> Indeed I did, sorry about that.  Thanks for taking care of it.

I used this update to test all the packages that are failing to update from 
F34 to F35. Since all of them are related with scitech I bring this issue 
here:

# dnf system-upgrade download --releasever=35
....
Error: 
 Problem 1: problem with installed package python3-rpy-3.4.5-3.fc34.x86_64
  - python3-rpy-3.4.5-3.fc34.x86_64 does not belong to a distupgrade 
repository
  - nothing provides R-core = 4.1.0 needed by python3-rpy-3.4.5-4.fc35.x86_64

 Problem 2: problem with installed package rpy-3.4.5-3.fc34.x86_64
  - package rpy-3.4.5-4.fc35.x86_64 requires python3-rpy = 3.4.5-4.fc35, but 
none of the providers can be installed
  - rpy-3.4.5-3.fc34.x86_64 does not belong to a distupgrade repository
  - nothing provides R-core = 4.1.0 needed by python3-rpy-3.4.5-4.fc35.x86_64

 Problem 3: problem with installed package cantor-20.12.2-3.fc34.x86_64
  - package cantor-21.04.3-2.fc35.x86_64 requires libjulia-internal.so.1()
(64bit), but none of the providers can be installed
  - package cantor-21.04.3-3.fc35.x86_64 requires libjulia-internal.so.1()
(64bit), but none of the providers can be installed
  - julia-1.6.2-1.fc34.x86_64 does not belong to a distupgrade repository
  - cantor-20.12.2-3.fc34.x86_64 does not belong to a distupgrade repository

 Problem 4: problem with installed package octave-
odepkg-0.9.1-0.14.20170102hg609.fc34.x86_64
  - package octave-odepkg-0.9.1-0.14.20170102hg609.fc34.x86_64 requires 
octave(api) = api-v53, but none of the providers can be installed
  - octave-6:5.2.0-12.fc34.x86_64 does not belong to a distupgrade repository

 Problem 5: problem with installed package cantor-libs-20.12.2-3.fc34.x86_64
  - package cantor-libs-21.04.3-2.fc35.x86_64 requires cantor = 
21.04.3-2.fc35, but none of the providers can be installed
  - package cantor-libs-21.04.3-3.fc35.x86_64 requires cantor = 
21.04.3-3.fc35, but none of the providers can be installed
  - package cantor-21.04.3-2.fc35.x86_64 requires libjulia-internal.so.1()
(64bit), but none of the providers can be installed
  - package cantor-21.04.3-3.fc35.x86_64 requires libjulia-internal.so.1()
(64bit), but none of the providers can be installed
  - package julia-1.6.2-1.fc34.x86_64 requires julia-common = 1.6.2-1.fc34, 
but none of the providers can be installed
  - julia-common-1.6.2-1.fc34.noarch does not belong to a distupgrade 
repository
  - cantor-libs-20.12.2-3.fc34.x86_64 does not belong to a distupgrade 
repository

 Problem 6: problem with installed package cantor-julia-20.12.2-3.fc34.x86_64
  - package cantor-julia-21.04.3-2.fc35.x86_64 requires libcantorlibs.so.28()
(64bit), but none of the providers can be installed
  - package cantor-julia-21.04.3-3.fc35.x86_64 requires cantor-libs(x86-64) = 
21.04.3-3.fc35, but none of the providers can be installed
  - package cantor-libs-21.04.3-2.fc35.x86_64 requires cantor = 
21.04.3-2.fc35, but none of the providers can be installed
  - package cantor-libs-21.04.3-3.fc35.x86_64 requires cantor = 
21.04.3-3.fc35, but none of the providers can be installed
  - package cantor-21.04.3-2.fc35.x86_64 requires libjulia-internal.so.1()
(64bit), but none of the providers can be installed
  - package cantor-21.04.3-3.fc35.x86_64 requires libjulia-internal.so.1()
(64bit), but none of the providers can be installed
  - package julia-1.6.2-1.fc34.x86_64 requires libopenlibm.so.2()(64bit), but 
none of the providers can be installed
  - package cantor-libs-20.12.2-3.fc34.x86_64 requires libqalculate.so.21()
(64bit), but none of the providers can be installed
  - openlibm-0.5.3-12.fc34.x86_64 does not belong to a distupgrade repository
  - libqalculate-3.19.0-1.fc34.x86_64 does not belong to a distupgrade 
repository
  - cantor-julia-20.12.2-3.fc34.x86_64 does not belong to a distupgrade 
repository
(try to add '--skip-broken' to skip uninstallable packages)

So by parts:

Problems 1 and 2 are related with me. :-)
Spot has updated R and forgot to rebuild rpy. I fixed this issue yesterday, 
the fix is already in rawhide and it should go to F35 after the next compose.

Problems 3, 5 and 6 are related with cantor.

This should probably be fixed here:
https://koji.fedoraproject.org/koji/buildinfo?buildID=1823441

And so all that remains is Problem 4:

I would say that probably octave-odepkg should be retired:
https://lists.gnu.org/archive/html/octave-maintainers/2020-10/msg00058.html

most of the functionality of octave-odepkg is in octave core since octave 5.

If the package is later revived we can bring it back to Fedora.

I think that the package is gone from Debian as well.

What do you think?

Best regards,
-- 
José Abílio

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