Tom "spot" Callaway a écrit :
On Wed, 2007-05-23 at 15:23 -0500, Tom "spot" Callaway wrote:
On Wed, 2007-05-23 at 22:22 +0200, pingou wrote:
Hello,
My name is Pierre-Yves Chibon, I am one of the french ambassadors.
I have just discovered this mailing list but I am glad to see that I am
not the only one using R under Fedora :-) (not lot of french do so)
To shortly introduce myself, I am student doing a master in
bioinformatics. And i will have to program under R so I have already
done the RPMs needed for the software on which I will have to work.
These RPMs are Biobase, Multtest, and Maanova (but this one was to try),
they are all from the bioconductor website.
Biobase and Multtest are waiting for reviews on bugzilla. And I am
waiting for their review to make other RPMs :-)
I hope to be helpful in what I can do...
Post the links to the bugzilla tickets? :)
OK, so when I looked at R-Biobase:
https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=240500
I noted that it was missing R CMD check in a %check section.
Of course, now I remember why. There is a circular "dependency" loop
between Biobase, tkWidgets and widgetTools when running R CMD check.
Biobase says it needs tkWidgets, tkWidgets says it needs Biobase.
Neither is really true, but I'd rather have Biobase running the check
than tkWidgets, so thats how I resolved the loop.
Occasionally, it is necessary to resolve this "check dependency loop" by
not running check on a package. In those cases, please DOCUMENT in the
spec file that the check command is commented out, and explain the loop
you're breaking.
I whipped up the necessary missing packages here:
DynDoc:
http://www.auroralinux.org/people/spot/review/R-DynDoc-1.14.0-1.fc7.src.rpm
http://www.auroralinux.org/people/spot/review/R-DynDoc.spec
widgetTools:
http://www.auroralinux.org/people/spot/review/R-widgetTools-1.12.0-1.fc7.src.rpm
http://www.auroralinux.org/people/spot/review/R-widgetTools.spec
tkWidgets:
http://www.auroralinux.org/people/spot/review/R-tkWidgets-1.14.0-1.fc7.src.rpm
http://www.auroralinux.org/people/spot/review/R-tkWidgets.spec
Pingou, if you'd like to own these packages in Fedora, that is fine by
me. If not, I'll put them up for review.
~spot
I do not mind to maintain them as I have no package yet.
But it is up to you as you have just made them... (much faster than I
did actually :-D)
I am checking my others RPMs to see if I have any mistake with the %check
Pingou
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