Author: kasal
Update of /cvs/extras/rpms/perl-bioperl/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv16315
Modified Files:
perl-bioperl.spec
Log Message:
- use the new filtering macros
Index: perl-bioperl.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/perl-bioperl.spec,v
retrieving revision 1.23
retrieving revision 1.24
diff -u -p -r1.23 -r1.24
--- perl-bioperl.spec 12 Nov 2009 04:09:42 -0000 1.23
+++ perl-bioperl.spec 17 Nov 2009 16:39:47 -0000 1.24
@@ -1,6 +1,6 @@
Name: perl-bioperl
Version: 1.6.1
-Release: 1%{?dist}
+Release: 2%{?dist}
Summary: Perl tools for computational molecular biology
Group: Development/Libraries
@@ -54,6 +54,14 @@ BuildRequires: perl(GraphViz)
#BuildRequires: perl(Algorithm::Munkres)
Requires: perl(:MODULE_COMPAT_%(eval "`%{__perl} -V:version`"; echo $version))
+# Packages perl-bioperl and perl-bioperl-run require each other. To break
+# this circular edependency (e.g., for bootstrapping), filter out all
+# Bio::Tools::Run::* module requirements; they are either self-satisfied
+# (and thus redundant) or they bring dependency on perl-bioperl-run.
+## be careful when commenting this out: macros are expanded even in comments
+#%%filter_from_requires /perl(Bio::Tools::Run::/d
+#%%?perl_default_filter
+
%description
BioPerl is a toolkit of Perl modules useful in building bioinformatics
solutions in Perl. It is built in an object-oriented manner so that
@@ -69,20 +77,8 @@ many modules depend on each other to ach
rm -r Bio/PhyloNetwork*
rm -r t/Tree/PhyloNetwork
-# these are the unwanted Requires for perl-bioperl-run, keeping in
-# case we need to do the temporary hack for bootstrapping again
-
-#cat << \EOF > %{_builddir}/BioPerl-%{version}/%{name}-req
-##!/bin/sh
-#%{__perl_requires} $* |\
-# sed -e '/perl(Bio::Tools::Run::Alignment::Clustalw)/d; /perl(Bio::Tools::Run::GenericParameters)/d; /perl(Bio::Tools::Run::Phylo::Molphy::ProtML)/d; /perl(Bio::Tools::Run::Phylo::Phylip::Neighbor)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtDist)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtPars)/d; /perl(Bio::Tools::Run::RemoteBlast)/d'
-#EOF
-
-#%%define __perl_requires %{_builddir}/BioPerl-%{version}/%{name}-req
-#chmod +x %{__perl_requires}
-
# remove all execute bits from the doc stuff
-find examples -type f -exec chmod -x {} 2>/dev/null ';'
+find examples -type f -exec chmod -x {} ';'
%build
%{__perl} Build.PL --installdirs vendor << EOF
@@ -131,6 +127,9 @@ rm -rf $RPM_BUILD_ROOT
%{_mandir}/man3/*.3*
%changelog
+* Thu Nov 12 2009 Stepan Kasal <skasal@xxxxxxxxxx> - 1.6.1-2
+- use the new filtering macros (cf #537138)
+
* Wed Nov 4 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.6.1-1
- Update to latest upstream 1.6.1
- Add BR: perl(XML::Simple), perl(DBD:SQLite) for new modules
--
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