Author: alexlan
Update of /cvs/extras/rpms/perl-bioperl/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv20254
Modified Files:
.cvsignore perl-bioperl.spec sources
Log Message:
- Update to 1.6.0 release candidate 2
- Remove filter for Bio::Graphics*, upstream removed them from the
tarball
Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/.cvsignore,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- .cvsignore 28 Dec 2008 04:23:11 -0000 1.4
+++ .cvsignore 8 Jan 2009 06:48:43 -0000 1.5
@@ -1 +1 @@
-BioPerl-1.5.9_1.tar.bz2
+BioPerl-1.5.9_2.tar.bz2
Index: perl-bioperl.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/perl-bioperl.spec,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -r1.16 -r1.17
--- perl-bioperl.spec 28 Dec 2008 23:56:06 -0000 1.16
+++ perl-bioperl.spec 8 Jan 2009 06:48:43 -0000 1.17
@@ -1,12 +1,12 @@
Name: perl-bioperl
Version: 1.5.9
-Release: 0.2.1%{?dist}
+Release: 0.3.2%{?dist}
Summary: Perl tools for computational molecular biology
Group: Development/Libraries
License: GPL+ or Artistic
URL: http://www.bioperl.org/
-Source0: http://bioperl.org/DIST/BioPerl-%{version}_1.tar.bz2
+Source0: http://bioperl.org/DIST/BioPerl-%{version}_2.tar.bz2
Patch0: bioperl-1.5.9-paths.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
@@ -58,7 +58,7 @@
many modules depend on each other to achieve a task.
%prep
-%setup -q -n bioperl-%{version}._1
+%setup -q -n BioPerl-%{version}._2
%patch0 -p1
# temporarily remove PhyloNetwork before compiling until upstream says
@@ -67,20 +67,17 @@
rm -r Bio/PhyloNetwork*
rm -r t/Tree/PhyloNetwork
-# Filter unwanted Requires: Bio::Graphics
-cat << \EOF > %{_builddir}/bioperl-%{version}._1/%{name}-req
-#!/bin/sh
-%{__perl_requires} $* |\
- sed -e '/perl(Bio::Graphics)/d; /perl(Bio::Graphics::Panel)/d'
-EOF
-
-%define __perl_requires %{_builddir}/bioperl-%{version}._1/%{name}-req
-chmod +x %{__perl_requires}
-
# these are the unwanted Requires for perl-bioperl-run, keeping in
# case we need to do the temporary hack for bootstrapping again
+#cat << \EOF > %{_builddir}/BioPerl-%{version}._2/%{name}-req
+##!/bin/sh
+#%{__perl_requires} $* |\
# sed -e '/perl(Bio::Tools::Run::Alignment::Clustalw)/d; /perl(Bio::Tools::Run::GenericParameters)/d; /perl(Bio::Tools::Run::Phylo::Molphy::ProtML)/d; /perl(Bio::Tools::Run::Phylo::Phylip::Neighbor)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtDist)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtPars)/d; /perl(Bio::Tools::Run::RemoteBlast)/d'
+#EOF
+
+#%%define __perl_requires %{_builddir}/BioPerl-%{version}._2/%{name}-req
+#chmod +x %{__perl_requires}
# remove all execute bits from the doc stuff
find examples -type f -exec chmod -x {} 2>/dev/null ';'
@@ -125,13 +122,18 @@
%defattr(-,root,root,-)
## don't distribute "doc" subdirectory, doesn't contain docs
%doc examples models
-%doc AUTHORS BUGS Changes ChangeLog DEPRECATED INSTALL LICENSE PLATFORMS README
+%doc AUTHORS BUGS Changes DEPRECATED INSTALL LICENSE PLATFORMS README
%{_bindir}/*
%{perl_vendorlib}/*
%{_mandir}/man1/*.1*
%{_mandir}/man3/*.3*
%changelog
+* Wed Jan 7 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.3.2
+- Update to 1.6.0 release candidate 2
+- Remove filter for Bio::Graphics*, upstream removed them from the
+ tarball
+
* Sun Dec 28 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.2.1
- Filter unwanted Requires: Bio::Graphics and Bio::Graphics::Panel
fixes broken deps until the .pl demo scripts remove them to the
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/sources,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- sources 28 Dec 2008 04:23:11 -0000 1.5
+++ sources 8 Jan 2009 06:48:43 -0000 1.6
@@ -1 +1 @@
-f7c85ef9cf175055eb56a097ae9d49b4 BioPerl-1.5.9_1.tar.bz2
+e01ce300592c8a5f7f1f1d2eba5405bc BioPerl-1.5.9_2.tar.bz2
--
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