Author: alexlan
Update of /cvs/extras/rpms/perl-bioperl/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv32558
Modified Files:
perl-bioperl.spec
Log Message:
- Filter unwanted Requires: Bio::Graphics and Bio::Graphics::Panel
fixes broken deps until the .pl demo scripts remove them to the
appropriate module
Index: perl-bioperl.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/perl-bioperl.spec,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -r1.15 -r1.16
--- perl-bioperl.spec 28 Dec 2008 04:23:11 -0000 1.15
+++ perl-bioperl.spec 28 Dec 2008 23:56:06 -0000 1.16
@@ -1,6 +1,6 @@
Name: perl-bioperl
Version: 1.5.9
-Release: 0.1.1%{?dist}
+Release: 0.2.1%{?dist}
Summary: Perl tools for computational molecular biology
Group: Development/Libraries
@@ -61,20 +61,26 @@
%setup -q -n bioperl-%{version}._1
%patch0 -p1
-# temporarily remove PhyloNetwork before compiling
+# temporarily remove PhyloNetwork before compiling until upstream says
+# they are ready for primetime and deps Math::Random and
+# Algorithm::Munkres are also packaged
rm -r Bio/PhyloNetwork*
rm -r t/Tree/PhyloNetwork
-# Temporary hack for bootstrapping
-# Filter unwanted Requires:
-# cat << \EOF > %{_builddir}/bioperl-%{version}/%{name}-req
-# #!/bin/sh
-# %{__perl_requires} $* |\
+# Filter unwanted Requires: Bio::Graphics
+cat << \EOF > %{_builddir}/bioperl-%{version}._1/%{name}-req
+#!/bin/sh
+%{__perl_requires} $* |\
+ sed -e '/perl(Bio::Graphics)/d; /perl(Bio::Graphics::Panel)/d'
+EOF
+
+%define __perl_requires %{_builddir}/bioperl-%{version}._1/%{name}-req
+chmod +x %{__perl_requires}
+
+# these are the unwanted Requires for perl-bioperl-run, keeping in
+# case we need to do the temporary hack for bootstrapping again
+
# sed -e '/perl(Bio::Tools::Run::Alignment::Clustalw)/d; /perl(Bio::Tools::Run::GenericParameters)/d; /perl(Bio::Tools::Run::Phylo::Molphy::ProtML)/d; /perl(Bio::Tools::Run::Phylo::Phylip::Neighbor)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtDist)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtPars)/d; /perl(Bio::Tools::Run::RemoteBlast)/d'
-# EOF
-#
-# %%define __perl_requires %{_builddir}/bioperl-%{version}/%{name}-req
-# chmod +x %{__perl_requires}
# remove all execute bits from the doc stuff
find examples -type f -exec chmod -x {} 2>/dev/null ';'
@@ -126,6 +132,11 @@
%{_mandir}/man3/*.3*
%changelog
+* Sun Dec 28 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.2.1
+- Filter unwanted Requires: Bio::Graphics and Bio::Graphics::Panel
+ fixes broken deps until the .pl demo scripts remove them to the
+ appropriate module
+
* Fri Dec 26 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.1.1
- Update to latest upstream, 1.5.9, which is release candidate 1 for 1.6.0
- Add BuildRequires for perl(Array::Compare) and perl(GraphViz).
--
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